> Markdown version of [/jobs/ext/4608773-senior-bioinformatics-analyst-engineer-with-security-clearance](https://www.wearedevelopers.com/jobs/ext/4608773-senior-bioinformatics-analyst-engineer-with-security-clearance). Every page supports `.md` or `Accept: text/markdown`. Links point to the HTML versions so they work for humans too. Agent guide: [/agents.md](https://www.wearedevelopers.com/agents.md).

---

# Senior Bioinformatics Analyst/Engineer with Security Clearance

- **Company:** Parsons Corporation
- **Location:** Frederick, MD, United States
- **Experience:** Expert
- **Salary:** $103,500 - $181,100
- **Contract:** Permanent contract
- **Skills:** Java (Programming Language), Artificial Intelligence, Bioinformatics, Cloud Computing, Computational Biology, Computer Simulation, Computer Programming, Databases, System Configuration, Continuous Integration, Perl (Programming Language), R (Programming Language), Python (Programming Language), Machine Learning, Software Engineering, High Performance Computing, Information Technology, Software Version Control, Metagenomics
- **Published:** November 6, 2026
- **Apply:** https://www.adzuna.com/details/5887126163

## About the Role

What Required Skills You'll Bring * Ph.D. or master's degree in bioinformatics, computational biology, computer science combined with biology or bioinformatics experience, or a closely related field.

 * At least seven years of hands-on bioinformatics experience.
 * Demonstrable multiyear experience in computer science, genomics, bioinformatics, and computational biology.
 * Expert programming skills using languages and tools such as Java, Perl, Python, and R.
 * Familiarity with relevant NGS technologies, including Illumina, PacBio, and ONT platforms.
 * Familiarity with microarray and/or single-cell sequencing technologies.
 * Excellent written and verbal communication and independent problem-solving ability.
 * Ability to perform under deadlines and in potentially austere environments.
 * Ability to provide occasional after-hours support based on assigned mission requirements.
 * Availability for national and international travel of up to two to four weeks.
 * U.S. citizenship due to federal contract requirements.
 * Eligibility to obtain and maintain a Secret security clearance and Government access.
What Desired Skills You'll Bring * Experience with infectious-disease genomics, metagenomics, biosurveillance, or outbreak response.

 * Experience with containers, workflow engines, version control, CI/CD, cloud, or high-performance computing.
 * Experience validating analytical pipelines using benchmark datasets.
 * Experience developing fieldable or disconnected bioinformatics software.
 * Experience with AI/ML model development for genomic or biological data.
 * Experience supporting DoD or international partner laboratories.
 * Experience producing user guides and training technical personnel.
 * An active Secret security clearance.

## Description

In a world of possibilities, pursue one with endless opportunities. Imagine Next! At Parsons, you can imagine a career where you thrive, work with exceptional people, and be yourself. Guided by our leadership vision of valuing people, embracing agility, and fostering growth, we cultivate an innovative culture that empowers you to achieve your full potential. Unleash your talent and redefine what's possible. Job Description: Parsons is seeking a Senior Bioinformatics Analyst/Engineer to develop and apply computational methods supporting infectious-disease genomics, pathogen surveillance, emerging-threat response, and fieldable bioinformatics at NMRC BDRD. The selected candidate will work across scientific and software disciplines to analyze NGS data, build and validate automated workflows, improve analytical methods, and support deployment of bioinformatics capabilities in laboratory and field environments. What You'll Be Doing * Analyze NGS data from pathogens, near neighbors,
bacteriophages, and complex samples.

 * Develop, validate, benchmark, and maintain automated bioinformatics pipelines.
 * Perform genome assembly, annotation, taxonomic profiling, and coinfection detection.
 * Conduct phylogenetic and molecular epidemiological analyses.
 * Prepare scientific data and metadata for approved database submission.
 * Test and evaluate emerging bioinformatics software and analytical methods.
 * Develop or improve bioinformatics software for laboratory or field use.
 * Apply statistical, AI, or machine-learning approaches to biological datasets when required.
 * Document workflows, software configurations, test results, limitations, and user procedures.
 * Support training, demonstrations, and technical reach-back for partner laboratories and field operators.
 * Troubleshoot analytical and software issues under operational deadlines.
 * Collaborate with scientific, laboratory, software, and international partner teams.