Data Integration and Analysis Engineer

CENTURI is an interdisciplinary research institute based in Marseille, dedicated to the study of complex biological systems. It relies on shared technological platforms and supports research teams in the analysis of large-scale biological data.

Mission

In close collaboration with researchers involved in the CENTURI project, the engineer will develop and implement integrated analysis pipelines combining imaging and omics data. They will provide methodological expertise for the exploitation of complex, heterogeneous and high-dimensional multimodal datasets.

Main activities

• Integration, analysis and visualization of multimodal data (2D/3D imaging, spatial imaging, transcriptomics, proteomics, metabolomics).
• Design and implementation of reproducible analysis pipelines.
• Development of machine learning and deep learning models.
• Use and adaptation of segmentation and tracking tools (Cellpose, Stardist, Napari, Fiji).
• Data curation and FAIR data structuring.
• Scientific support and methodological guidance to research teams.
• Participation in training activities and dissemination of best practices.

• PhD (or equivalent) with 1-3 years of experience.
• Excellent proficiency in Python and AI approaches applied to biology.
• Strong background in image analysis, omics data analysis and reproducible workflows.
• Experience with Git, containerization and HPC environments.
• Scientific English level B2-C1 and strong communication skills in interdisciplinary contexts.