Software Developer for Biomedical Data Modeling Infrastructure

· Is comfortable with benchmarking infrastructure for federated analysis and federated learning (not developing models or performing research on modeling). · Is able to contribute to current software development projects. · Is excited about developing software from scratch for biomedical research projects. Key Duties

• Software Development: Work alone and collaboratively to develop new software that helps the group reach its goals.
• Software Maintenance: Work alone and collaboratively to maintain the group's software.
• Infrastructure Tooling: Build Python microservices, Docker/CI pipelines, and REST endpoints.
• Analytical Reporting: Create R/Python notebooks and/or interactive HTML reports for software and infrastructure checks.
• CI/CD: Be able to adapt to a CI/CD culture and contribute to maintaining and advocating for it.
• Collaboration & Compliance: Work with technical people, clinicians, and bioinformaticians in a professional and friendly manner., * A cover/motivation letter with a statement of interest in English, clearly specifying for which specific area and topics the applicant wishes to be considered. Additionally, two references for further contacts must be included. Applications without this document will not be considered.

Development of the recruitment process

The selection will be carried out through a competitive examination system ("Concurso-Oposición"). The recruitment process consists of two phases:

• Curriculum Analysis: Evaluation of previous experience and/or scientific history, degree, training, and other professional information relevant to the position. - 40 points
• Interview phase: The highest-rated candidates at the curriculum level will be invited to the interview phase, conducted by the corresponding department and Human Resources. In this phase, technical competencies, knowledge, skills, and professional experience related to the position, as well as the required personal competencies, will be evaluated. - 60 points. A minimum of 30 points out of 60 must be obtained to be eligible for the position.

The recruitment panel will be composed of at least three people, ensuring at least 25% representation of women.

In accordance with OTM-R principles, a gender-balanced recruitment panel is formed for each vacancy at the beginning of the process. After reviewing the content of the applications, the panel will begin the interviews, with at least one technical and one administrative interview. At a minimum, a personality questionnaire as well as a technical exercise will be conducted during the process.

The panel will make a final decision, and all individuals who participated in the interview phase will receive feedback with details on the acceptance or rejection of their profile.

At BSC, we seek continuous improvement in our recruitment processes. For any suggestions or comments/complaints about our recruitment processes, please contact recruitment [at] bsc [dot] es. For more information, please follow this link.

• Education

• BSc/MSc in Computer Science, Bioinformatics, or a related field with proven experience.

• Essential Knowledge and Professional Experience

• Approximately 2 years of coding experience.
• Knowledge of coding and software development.

• Additional Knowledge and Professional Experience

• Python (FastAPI/Flask, pytest, etc.) for infrastructure, software, and API design.
• SQL, Git, Linux, and familiarity with Docker/CI-CD.
• Exposure to healthcare and biomedical topics (tailored to the group's research).
• Experience with REST/GraphQL schema design.
• Experience with workflow managers (Nextflow, Airflow) or orchestrators (Kubernetes).
• HPC or cloud know-how (OpenStack, AWS/GCP/Azure).
• Exposure to privacy-enhancing technologies (synthetic data, differential privacy).

• Competences

• Good writing and presentation skills.
• Used to working under pressure and with strict deadlines.
• Strong personal soft-skills sets: communicative, enthusiastic, highly collaborative, proactive, self-driven.
• Fluency in written and spoken English.

• The position will be located at BSC within the Life Sciences Department
• We offer a full-time contract (37.5h/week), a good working environment, a highly stimulating environment with state-of-the-art infrastructure, flexible working hours, extensive training plan, restaurant tickets, private health insurance, support to the relocation procedures
• Duration: Until 31/12/2026
• Holidays: 22 days of holidays + 6 personal days + 24th and 31st of December per our collective agreement
• Salary: we offer a competitive salary commensurate with the qualifications and experience of the candidate and according to the cost of living in Barcelona
• Starting date: asap

The Barcelona Supercomputing Center - Centro Nacional de Supercomputación (BSC-CNS) is the leading supercomputing center in Spain. It houses MareNostrum, one of the most powerful supercomputers in Europe, was a founding and hosting member of the former European HPC infrastructure PRACE (Partnership for Advanced Computing in Europe), and is now hosting entity for EuroHPC JU, the Joint Undertaking that leads large-scale investments and HPC provision in Europe. The mission of BSC is to research, develop and manage information technologies in order to facilitate scientific progress. BSC combines HPC service provision and R&D into both computer and computational science (life, earth and engineering sciences) under one roof, and currently has over 1000 staff from 60 countries. Look at the BSC experience: BSC-CNS YouTube Channel Let's stay connected with BSC Folks! We are particularly interested for this role in the strengths and lived experiences of women and underrepresented groups to help us avoid perpetuating biases and oversights in science and IT research. In instances of equal merit, the incorporation of the under-represented sex will be favoured. We promote Equity, Diversity and Inclusion, fostering an environment where each and every one of us is appreciated for who we are, regardless of our differences. If you consider that you do not meet all the requirements, we encourage you to continue applying for the job offer. We value diversity of experiences and skills, and you could bring unique perspectives to our team. Context And Mission The Technologies for Biomedical Research Lab (TechBio Lab) within the Life Sciences Department of the Barcelona Supercomputing Center (BSC) brings together specialised teams to enable research activities in the Life Sciences. These teams cover a range of areas, including research data and software, infrastructure for centralized and federated analysis and learning, etc. From a technical perspective, TechBio Lab's activities focus on developing infrastructures that support Life Sciences research, including software components for bioinformatics, research data management- especially in healthcare-and scientific and technical benchmarking of research software in close collaboration with various communities and projects. Special attention is given to technological developments enabling the analysis of sensitive data in federated settings. This approach facilitates the generation of AI models without requiring data to be moved from its original site. Complementing these efforts, the lab also contributes to the development of Trusted Research Environments that enable the use of research data on single sites under specific, configurable usage conditions. The laboratory coordinates the Spanish National Bioinformatics Institute (INB). The Spanish National Bioinformatics Institute (INB) is the major bioinformatics platform in Spain and the Spanish node of ELIXIR. ELIXIR (European Life Science Infrastructure for Biological Information) is a pan-European organization founded in 2014 which aims to integrate and harmonize European bioinformatics infrastructures. ELIXIR coordinates the participation of more than 22 countries; engages with other strategic European initiatives and projects, e.g. ESFRI, Research Data Alliance, EUDat and EGI; promotes specific training activities and workshops on ELIXIR resources, partners with industry, and play a key role in shaping the bioinformatics landscape. Within ELIXIR, the INB is responsible for the bioinformatics infrastructure offered by Spain and, therefore, should guarantee its alignment with the strategic areas put forward by ELIXIR. Since 2018, the INB has two overarching objectives: deepen the alignment of its activities with ELIXIR, and increase the translational impact of INB actions towards the Spanish National Health System (SNS). For the latter objective, the INB has created and supports TransBioNet (Translational Bioinformatics Network), which aims to structure, bring together and work with bioinformatics groups in healthcare settings with a particular focus on the Health Research Institutes (IIS) recognized by the ISCIII. The INB coordinates the Data Science programme within the Spanish Infrastructure for Personalized Medicine associated with Science and Technology (IMPaCT in Spanish), which aims to establish an interoperable framework for biomedical data integration and analysis, addressing questions from clinicians through the implementation of computing systems in health environments. This programme will prepare clinical data in Spain for secondary use, including medical imaging, structured and non-structured clinical data and genomics, considering all the legal provisions for each possible use and setting. This programme will involve the liaison with diverse stakeholders, including hospitals, the ISCIII, companies in the biomedical sector, the Spanish Medicines Agency and biomedical researchers, among others. All developments will be aligned with the European initiatives in the area, including those from ELIXIR, 1+Million Genomes, the Global Alliance for Genomics and Health and data-sharing projects such as FAIR4Health, HealthyCloud and TEHDAS. In 2023 the INB, the Spanish Node of ELIXIR, renovated its portfolio of bioinformatics resources, including platforms, databases, individual tools and web-services. This portfolio, known as Service Delivery Plan (SDP), constitutes the scientific-technical contribution of Spain to ELIXIR. The candidate will join a dynamic Life Sciences department team, working in the highly cooperative, multidisciplinary, distributed context of ELIXIR and INB (Spanish National Bioinformatics Institute/ELIXIR-ES) and related national initiatives, such as TransBioNet.